SNP Profiles of AMAZ 12 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
1._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
2._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
3._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
4._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
5._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
6._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
7._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
8._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
9._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
10._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
11._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
12._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
13._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
14._GC-05-010-1-10	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
15._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AA	CT
16._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	_	AT	AG	TT	AA	CT
17._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	_	AT	AG	TT	AA	CT
18._GC-05-158-4-11	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AG	CT
19._AMAZ_12	CC	AA	CG	CC	CT	CT	GT	CT	TT	AT	AG	TT	AG	CT
20._AMAZ_12	CC	AA	GG	TT	CT	TT	TT	CC	TT	AA	GG	CT	AG	CT
21._RUQ_334	CC	AG	GG	TT	CT	TT	TT	CC	CT	AA	GG	CT	AG	CT
22._RUQ_334	_	AA	GG	TT	_	_	TT	_	_	_	_	CT	AG	_
23._RUQ_334	_	_	GG	_	_	_	TT	_	CT	_	GG	_	AG	_
24._RUQ_334b	_	_	GG	_	_	_	TT	_	TT	_	GG	_	AG	_
25._RUQ_334	GG	AA	CC	AA	AG	AA	AA	_	_	AA	GG	AG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
1._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
2._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
3._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
4._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
5._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
6._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
7._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
8._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
9._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
10._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
11._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
12._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
13._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
14._GC-05-010-1-10	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
15._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
16._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
17._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
18._GC-05-158-4-11	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
19._AMAZ_12	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC	AG
20._AMAZ_12	AT	GG	TT	CT	CG	GG	AA	CT	AA	GG	GT	CC	CC	AA
21._RUQ_334	AT	GG	TT	CT	CG	GG	AA	CT	AA	GG	GT	CC	CC	AA
22._RUQ_334	_	_	_	TT	CG	GG	_	CT	AA	CG	GT	CC	CC	AA
23._RUQ_334	_	_	_	_	GG	GG	AA	_	AA	GG	_	_	AC	_
24._RUQ_334b	_	_	_	_	CG	GG	AA	_	AA	GG	_	_	CC	_
25._RUQ_334	AT	GG	AA	AG	CG	CC	_	AG	AA	CG	AC	_	CC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
1._GC-05-158-4-11	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
2._GC-05-158-4-11	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
3._GC-05-010-1-10	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
4._GC-05-010-1-10	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
5._GC-05-010-1-10	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
6._GC-05-010-1-10	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
7._AMAZ_12	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
8._AMAZ_12	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
9._AMAZ_12	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
10._AMAZ_12	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
11._AMAZ_12	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
12._AMAZ_12	GG	AT	CT	AA	CG	AA	_	GT	CC	AA	GG	X_X	X_X	X_X
13._GC-05-158-4-11	GG	AT	CT	AA	CG	AA	_	GT	CC	AA	GG	X_X	X_X	X_X
14._GC-05-010-1-10	GG	AT	CT	AA	CG	_	CT	GT	CC	AA	GG	X_X	X_X	X_X
15._AMAZ_12	GG	AT	CT	AA	CG	_	CT	GT	CC	AA	GG	X_X	X_X	X_X
16._GC-05-158-4-11	GG	AT	CT	AA	CG	_	CT	GT	_	AA	GG	X_X	X_X	X_X
17._AMAZ_12	GG	AT	CT	AA	CG	_	CT	GT	_	AA	GG	X_X	X_X	X_X
18._GC-05-158-4-11	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
19._AMAZ_12	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
20._AMAZ_12	GG	AT	CC	GG	CG	AC	CC	TT	AC	AT	GG	X_X	X_X	X_X
21._RUQ_334	AG	AT	CC	GG	CG	AC	CC	GT	AC	AT	GG	X_X	X_X	X_X
22._RUQ_334	_	AT	CC	GG	CG	AC	CC	GT	AC	_	_	X_X	X_X	X_X
23._RUQ_334	_	_	_	GG	_	_	_	_	AC	_	_	X_X	X_X	X_X
24._RUQ_334b	_	_	_	GG	_	_	_	_	AC	_	_	X_X	X_X	X_X
25._RUQ_334	GG	AT	GG	GG	CG	AC	GG	AC	AC	AT	GG	X_X	X_X	X_X

Input profile: AMAZ_12

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 3

Dapeng Zhang, 2016

1._AMAZ_12 GC-05-158-4-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

2._AMAZ_12 GC-05-158-4-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

3._AMAZ_12 GC-05-010-1-10

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._AMAZ_12 GC-05-010-1-10

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

5._AMAZ_12 GC-05-010-1-10

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._AMAZ_12 GC-05-010-1-10

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

7._AMAZ_12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 3

Dapeng Zhang, 2016

8._AMAZ_12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 5

Dapeng Zhang, 2016

9._AMAZ_12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 2 > FP

Dapeng Zhang, 2016

10._AMAZ_12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 4 > FP

Dapeng Zhang, 2016

11._AMAZ_12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 1 > FP

Dapeng Zhang, 2016

12._AMAZ_12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 2 > FP

Dapeng Zhang, 2016

13._AMAZ_12 GC-05-158-4-11

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

14._AMAZ_12 GC-05-010-1-10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

15._AMAZ_12

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._AMAZ_12 GC-05-158-4-11

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._AMAZ_12

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 5

Dapeng Zhang, 2016

18._AMAZ_12 GC-05-158-4-11

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

19._AMAZ_12

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 4

Dapeng Zhang, 2016

20._AMAZ_12

66.7 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B B94 T2

Dapeng Zhang, 2016

21._AMAZ_12 RUQ_334

64.1 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

22._AMAZ_12 RUQ_334

58.3 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

23._AMAZ_12 RUQ_334

53.8 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

24._AMAZ_12 RUQ_334b

50 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

25._AMAZ_12 RUQ_334

36.8 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25